NeXtprot2rdf

Checkstyle Results

The following document contains the results of Checkstyle.

Summary

Files	Infos	Warnings	Errors
5	0	0	988

Files

Files	I	W	E
org/openphacts/nextprot/App.java	0	0	10
org/openphacts/nextprot/TemplateAssembler.java	0	0	847
org/openphacts/nextprot/TemplateException.java	0	0	9
org/openphacts/nextprot/util/EchoTool.java	0	0	110
org/openphacts/nextprot/util/HashTool.java	0	0	12

Rules

Rules	Violations	Severity
JavadocPackage allowLegacy: `"true"`	2	Error
NewlineAtEndOfFile	0	Error
Translation	0	Error
FileLength	0	Error
FileTabCharacter eachLine: `"true"`	314	Error
RegexpSingleline message: `"Line has trailing spaces."` format: `"\s+$"`	31	Error
JavadocMethod	17	Error
JavadocType	3	Error
JavadocVariable	17	Error
JavadocStyle	3	Error
ConstantName	0	Error
LocalFinalVariableName	0	Error
LocalVariableName	0	Error
MemberName	0	Error
MethodName	0	Error
PackageName	0	Error
ParameterName	0	Error
StaticVariableName	0	Error
TypeName	0	Error
AvoidStarImport	0	Error
IllegalImport	0	Error
RedundantImport	0	Error
UnusedImports	2	Error
LineLength	18	Error
MethodLength	0	Error
ParameterNumber	0	Error
EmptyForIteratorPad	0	Error
MethodParamPad	0	Error
NoWhitespaceAfter	1	Error
NoWhitespaceBefore	0	Error
OperatorWrap	3	Error
ParenPad	373	Error
TypecastParenPad	0	Error
WhitespaceAfter	7	Error
WhitespaceAround	109	Error
ModifierOrder	0	Error
RedundantModifier	0	Error
AvoidNestedBlocks	0	Error
EmptyBlock	0	Error
LeftCurly	2	Error
NeedBraces	26	Error
RightCurly	13	Error
AvoidInlineConditionals	2	Error
DoubleCheckedLocking	0	Error
EmptyStatement	0	Error
EqualsHashCode	0	Error
HiddenField	0	Error
IllegalInstantiation	0	Error
InnerAssignment	2	Error
MagicNumber	3	Error
MissingSwitchDefault	0	Error
RedundantThrows	0	Error
SimplifyBooleanExpression	0	Error
SimplifyBooleanReturn	0	Error
DesignForExtension	11	Error
FinalClass	0	Error
HideUtilityClassConstructor	1	Error
InterfaceIsType	0	Error
VisibilityModifier	0	Error
ArrayTypeStyle	0	Error
FinalParameters	29	Error
TodoComment	0	Error
UpperEll	0	Error

Details

org/openphacts/nextprot/App.java

Violation	Message	Line
	Line has trailing spaces.	7
	Utility classes should not have a public or default constructor.	7
	'{' should be on the previous line.	8
	Missing a Javadoc comment.	9
	'(' is followed by whitespace.	9
	Parameter args should be final.	9
	')' is preceded with whitespace.	9
	'{' should be on the previous line.	10
	'(' is followed by whitespace.	11
	')' is preceded with whitespace.	11

org/openphacts/nextprot/TemplateAssembler.java

Violation	Message	Line
	Missing package-info.java file.	0
	Line has trailing spaces.	4
	Unused import - java.net.URL.	16
	Unused import - java.util.Collection.	20
	Missing a Javadoc comment.	53
	Missing a Javadoc comment.	54
	Missing a Javadoc comment.	55
	Missing a Javadoc comment.	57
	Missing a Javadoc comment.	59
	Missing a Javadoc comment.	60
	Missing a Javadoc comment.	61
	Missing a Javadoc comment.	62
	Missing a Javadoc comment.	63
	Missing a Javadoc comment.	65
	Missing a Javadoc comment.	66
	Missing a Javadoc comment.	67
	Missing a Javadoc comment.	68
	Missing a Javadoc comment.	69
	Line is longer than 80 characters.	71
	Missing a Javadoc comment.	71
	Missing a Javadoc comment.	73
	Missing a Javadoc comment.	76
	Line contains a tab character.	77
	'if' is not followed by whitespace.	77
	'(' is followed by whitespace.	77
	')' is preceded with whitespace.	77
	Line contains a tab character.	78
	'(' is followed by whitespace.	78
	')' is preceded with whitespace.	78
	Line contains a tab character.	79
	Line is longer than 80 characters.	80
	Line contains a tab character.	80
	'(' is followed by whitespace.	80
	')' is preceded with whitespace.	80
	Line contains a tab character.	81
	'if' is not followed by whitespace.	81
	'(' is followed by whitespace.	81
	')' is preceded with whitespace.	81
	Line contains a tab character.	82
	Line contains a tab character.	83
	'(' is followed by whitespace.	83
	')' is preceded with whitespace.	83
	Line contains a tab character.	84
	Line contains a tab character.	85
	'(' is followed by whitespace.	85
	')' is preceded with whitespace.	85
	Line contains a tab character.	86
	'(' is followed by whitespace.	86
	'+' is not preceded with whitespace.	86
	'+' is not followed by whitespace.	86
	')' is preceded with whitespace.	86
	Line contains a tab character.	87
	'}' should be on the same line.	87
	'else' construct must use '{}'s.	88
	Line contains a tab character.	88
	Line contains a tab character.	89
	'(' is followed by whitespace.	89
	')' is preceded with whitespace.	89
	Line contains a tab character.	90
	'}' should be on the same line.	90
	Line contains a tab character.	91
	'catch' is not followed by whitespace.	91
	'(' is followed by whitespace.	91
	')' is preceded with whitespace.	91
	Line is longer than 80 characters.	92
	Line contains a tab character.	92
	'(' is followed by whitespace.	92
	'+' is not preceded with whitespace.	92
	'+' is not followed by whitespace.	92
	'!=' is not preceded with whitespace.	92
	'!=' is not followed by whitespace.	92
	'?' is not preceded with whitespace.	92
	Avoid inline conditionals.	92
	'?' is not followed by whitespace.	92
	':' is not preceded with whitespace.	92
	':' is not followed by whitespace.	92
	')' is preceded with whitespace.	92
	Line contains a tab character.	93
	Line contains a tab character.	94
	Line contains a tab character.	95
	Missing a Javadoc comment.	98
	'(' is followed by whitespace.	98
	Parameter templDir should be final.	98
	Parameter mPath should be final.	98
	Parameter ctxt should be final.	98
	')' is preceded with whitespace.	98
	Line contains a tab character.	99
	'if' construct must use '{}'s.	100
	Line has trailing spaces.	100
	Line contains a tab character.	100
	'if' is not followed by whitespace.	100
	'(' is followed by whitespace.	100
	')' is preceded with whitespace.	100
	Line contains a tab character.	101
	Line contains a tab character.	102
	'if' is not followed by whitespace.	102
	'(' is followed by whitespace.	102
	')' is preceded with whitespace.	102
	Line contains a tab character.	103
	'(' is followed by whitespace.	103
	')' is preceded with whitespace.	103
	Line contains a tab character.	104
	Line contains a tab character.	105
	Line contains a tab character.	107
	'if' construct must use '{}'s.	108
	Line has trailing spaces.	108
	Line contains a tab character.	108
	'if' is not followed by whitespace.	108
	'(' is followed by whitespace.	108
	')' is preceded with whitespace.	108
	Line contains a tab character.	109
	'(' is followed by whitespace.	109
	')' is preceded with whitespace.	109
	'else' construct must use '{}'s.	110
	Line contains a tab character.	110
	Line contains a tab character.	111
	'(' is followed by whitespace.	111
	')' is preceded with whitespace.	111
	Line contains a tab character.	112
	'if' is not followed by whitespace.	112
	'(' is followed by whitespace.	112
	')' is preceded with whitespace.	112
	Line is longer than 80 characters.	113
	Line contains a tab character.	113
	'(' is followed by whitespace.	113
	'+' is not preceded with whitespace.	113
	'+' is not followed by whitespace.	113
	')' is preceded with whitespace.	113
	Line contains a tab character.	114
	Line contains a tab character.	115
	Line contains a tab character.	116
	'(' is followed by whitespace.	116
	'+' is not preceded with whitespace.	116
	'+' is not followed by whitespace.	116
	')' is preceded with whitespace.	116
	Line contains a tab character.	117
	Line contains a tab character.	118
	'(' is followed by whitespace.	118
	')' is preceded with whitespace.	118
	Line contains a tab character.	119
	'cast' is not followed by whitespace.	119
	'(' is followed by whitespace.	119
	')' is preceded with whitespace.	119
	'if' construct must use '{}'s.	120
	Line contains a tab character.	120
	'if' is not followed by whitespace.	120
	'(' is followed by whitespace.	120
	')' is preceded with whitespace.	120
	Line contains a tab character.	121
	Line contains a tab character.	122
	'(' is followed by whitespace.	122
	')' is preceded with whitespace.	122
	Line is longer than 80 characters.	123
	Line contains a tab character.	123
	'(' is followed by whitespace.	123
	'+' is not preceded with whitespace.	123
	'+' is not followed by whitespace.	123
	'+' is not preceded with whitespace.	123
	'+' is not followed by whitespace.	123
	')' is preceded with whitespace.	123
	Line contains a tab character.	124
	'}' should be on the same line.	124
	Line contains a tab character.	125
	'catch' is not followed by whitespace.	125
	'(' is followed by whitespace.	125
	')' is preceded with whitespace.	125
	Line contains a tab character.	126
	'(' is followed by whitespace.	126
	')' is preceded with whitespace.	126
	Line contains a tab character.	127
	'}' should be on the same line.	127
	Line contains a tab character.	128
	'catch' is not followed by whitespace.	128
	'(' is followed by whitespace.	128
	')' is preceded with whitespace.	128
	Line contains a tab character.	129
	'(' is followed by whitespace.	129
	')' is preceded with whitespace.	129
	Line contains a tab character.	130
	Missing a Javadoc comment.	133
	'(' is followed by whitespace.	133
	Parameter templDir should be final.	133
	Parameter ctxt should be final.	133
	')' is preceded with whitespace.	133
	Line contains a tab character.	134
	'if' construct must use '{}'s.	135
	Line contains a tab character.	135
	'if' is not followed by whitespace.	135
	'(' is followed by whitespace.	135
	')' is preceded with whitespace.	135
	Line contains a tab character.	136
	Line is longer than 80 characters.	138
	Line contains a tab character.	138
	'(' is followed by whitespace.	138
	'{' is followed by whitespace.	138
	')' is preceded with whitespace.	138
	Line contains a tab character.	139
	'while' is not followed by whitespace.	139
	'(' is followed by whitespace.	139
	')' is preceded with whitespace.	139
	Line contains a tab character.	140
	Line contains a tab character.	141
	Line contains a tab character.	142
	'(' is followed by whitespace.	142
	')' is preceded with whitespace.	142
	Line contains a tab character.	143
	'(' is followed by whitespace.	143
	')' is preceded with whitespace.	143
	Line contains a tab character.	144
	'(' is followed by whitespace.	144
	')' is preceded with whitespace.	144
	Line contains a tab character.	145
	'(' is followed by whitespace.	145
	'+' is not preceded with whitespace.	145
	'+' is not followed by whitespace.	145
	'+' is not preceded with whitespace.	145
	'+' is not followed by whitespace.	145
	'+' is not preceded with whitespace.	145
	'+' is not followed by whitespace.	145
	')' is preceded with whitespace.	145
	Line contains a tab character.	146
	'}' should be on the same line.	146
	Line contains a tab character.	147
	'catch' is not followed by whitespace.	147
	'(' is followed by whitespace.	147
	')' is preceded with whitespace.	147
	Line contains a tab character.	148
	'(' is followed by whitespace.	148
	')' is preceded with whitespace.	148
	Line contains a tab character.	149
	Line contains a tab character.	150
	Missing a Javadoc comment.	153
	'(' is followed by whitespace.	153
	Parameter templDir should be final.	153
	Parameter context should be final.	153
	')' is preceded with whitespace.	153
	Line contains a tab character.	154
	'if' construct must use '{}'s.	155
	Line contains a tab character.	155
	'if' is not followed by whitespace.	155
	'(' is followed by whitespace.	155
	')' is preceded with whitespace.	155
	Line contains a tab character.	156
	'(' is followed by whitespace.	156
	')' is preceded with whitespace.	156
	Line contains a tab character.	157
	Line contains a tab character.	159
	Line contains a tab character.	160
	'(' is followed by whitespace.	160
	'cast' is not followed by whitespace.	160
	'(' is followed by whitespace.	160
	')' is preceded with whitespace.	160
	')' is preceded with whitespace.	160
	Line contains a tab character.	162
	Line contains a tab character.	163
	'(' is followed by whitespace.	163
	')' is preceded with whitespace.	163
	Line contains a tab character.	165
	Line contains a tab character.	166
	'(' is followed by whitespace.	166
	')' is preceded with whitespace.	166
	Line contains a tab character.	167
	'(' is followed by whitespace.	167
	')' is preceded with whitespace.	167
	Line contains a tab character.	169
	Line contains a tab character.	170
	'(' is followed by whitespace.	170
	')' is preceded with whitespace.	170
	Line contains a tab character.	172
	Line has trailing spaces.	173
	Missing a Javadoc comment.	175
	'(' is followed by whitespace.	175
	Parameter context should be final.	175
	')' is preceded with whitespace.	175
	Line contains a tab character.	176
	Line contains a tab character.	177
	'if' construct must use '{}'s.	178
	Line contains a tab character.	178
	'if' is not followed by whitespace.	178
	'(' is followed by whitespace.	178
	Inner assignments should be avoided.	178
	'cast' is not followed by whitespace.	178
	'(' is followed by whitespace.	178
	')' is preceded with whitespace.	178
	')' is preceded with whitespace.	178
	Line contains a tab character.	179
	Line contains a tab character.	180
	'(' is followed by whitespace.	180
	')' is preceded with whitespace.	180
	Line contains a tab character.	181
	Line contains a tab character.	182
	Line contains a tab character.	183
	'while' is not followed by whitespace.	183
	'(' is followed by whitespace.	183
	')' is preceded with whitespace.	183
	Line contains a tab character.	184
	'if' construct must use '{}'s.	185
	Line contains a tab character.	185
	'if' is not followed by whitespace.	185
	'(' is followed by whitespace.	185
	'&&' should be on a new line.	185
	Line contains a tab character.	186
	'(' is followed by whitespace.	186
	')' is preceded with whitespace.	186
	')' is preceded with whitespace.	186
	Line contains a tab character.	187
	'(' is followed by whitespace.	187
	')' is preceded with whitespace.	187
	Line contains a tab character.	188
	Line contains a tab character.	189
	Line has trailing spaces.	192
	Missing a Javadoc comment.	192
	'(' is followed by whitespace.	192
	Parameter props should be final.	192
	')' is preceded with whitespace.	192
	Line contains a tab character.	193
	Line contains a tab character.	195
	'if' is not followed by whitespace.	195
	'(' is followed by whitespace.	195
	')' is preceded with whitespace.	195
	Line contains a tab character.	196
	'(' is followed by whitespace.	196
	')' is preceded with whitespace.	196
	Line contains a tab character.	198
	'(' is followed by whitespace.	198
	'+' is not preceded with whitespace.	198
	'+' is not followed by whitespace.	198
	')' is preceded with whitespace.	198
	Line contains a tab character.	200
	Line contains a tab character.	201
	'(' is followed by whitespace.	201
	Line is longer than 80 characters.	202
	Line contains a tab character.	202
	')' is preceded with whitespace.	202
	Line contains a tab character.	203
	Line contains a tab character.	204
	Line contains a tab character.	205
	'(' is followed by whitespace.	205
	')' is preceded with whitespace.	205
	Line contains a tab character.	206
	Line contains a tab character.	207
	'(' is followed by whitespace.	207
	')' is preceded with whitespace.	207
	Line contains a tab character.	208
	'(' is followed by whitespace.	208
	')' is preceded with whitespace.	208
	Line contains a tab character.	209
	'}' should be on the same line.	209
	Line contains a tab character.	210
	'catch' is not followed by whitespace.	210
	'(' is followed by whitespace.	210
	')' is preceded with whitespace.	210
	Line contains a tab character.	211
	'(' is followed by whitespace.	211
	')' is preceded with whitespace.	211
	Line contains a tab character.	212
	'(' is followed by whitespace.	212
	')' is preceded with whitespace.	212
	Line contains a tab character.	213
	Line contains a tab character.	214
	Line contains a tab character.	215
	Missing a Javadoc comment.	218
	'(' is followed by whitespace.	218
	Parameter templDir should be final.	218
	Parameter context should be final.	218
	')' is preceded with whitespace.	218
	Line contains a tab character.	219
	Line is longer than 80 characters.	221
	Line contains a tab character.	221
	'(' is followed by whitespace.	221
	'(' is followed by whitespace.	221
	')' is preceded with whitespace.	221
	')' is preceded with whitespace.	221
	Line contains a tab character.	222
	'if' is not followed by whitespace.	222
	'(' is followed by whitespace.	222
	')' is preceded with whitespace.	222
	Line contains a tab character.	223
	Line contains a tab character.	224
	'if' is not followed by whitespace.	224
	'(' is followed by whitespace.	224
	')' is preceded with whitespace.	224
	Line contains a tab character.	225
	'(' is followed by whitespace.	225
	')' is preceded with whitespace.	225
	Line contains a tab character.	226
	'(' is followed by whitespace.	226
	')' is preceded with whitespace.	226
	Line contains a tab character.	227
	Line contains a tab character.	228
	'}' should be on the same line.	228
	Line contains a tab character.	229
	Line contains a tab character.	230
	'(' is followed by whitespace.	230
	')' is preceded with whitespace.	230
	Line contains a tab character.	231
	'(' is followed by whitespace.	231
	')' is preceded with whitespace.	231
	Line contains a tab character.	232
	Line has trailing spaces.	233
	Line contains a tab character.	233
	Line contains a tab character.	234
	')' is preceded with whitespace.	234
	Line contains a tab character.	235
	')' is preceded with whitespace.	235
	Line contains a tab character.	236
	')' is preceded with whitespace.	236
	Line contains a tab character.	238
	'if' is not followed by whitespace.	238
	'(' is followed by whitespace.	238
	')' is preceded with whitespace.	238
	Line contains a tab character.	239
	'if' construct must use '{}'s.	240
	Line contains a tab character.	240
	'if' is not followed by whitespace.	240
	'(' is followed by whitespace.	240
	Inner assignments should be avoided.	240
	'cast' is not followed by whitespace.	240
	'(' is followed by whitespace.	240
	')' is preceded with whitespace.	240
	')' is preceded with whitespace.	240
	Line contains a tab character.	241
	Line contains a tab character.	242
	'(' is followed by whitespace.	242
	')' is preceded with whitespace.	242
	Line contains a tab character.	243
	'(' is followed by whitespace.	243
	')' is preceded with whitespace.	243
	Line contains a tab character.	244
	'}' should be on the same line.	244
	'else' construct must use '{}'s.	245
	Line contains a tab character.	245
	Line contains a tab character.	246
	'(' is followed by whitespace.	246
	')' is preceded with whitespace.	246
	Line contains a tab character.	248
	Line has trailing spaces.	251
	Missing a Javadoc comment.	251
	'(' is followed by whitespace.	251
	Parameter templDir should be final.	251
	Parameter outDir should be final.	251
	')' is preceded with whitespace.	251
	Line contains a tab character.	252
	Line contains a tab character.	254
	Line contains a tab character.	255
	Line contains a tab character.	256
	'if' is not followed by whitespace.	256
	'(' is followed by whitespace.	256
	')' is preceded with whitespace.	256
	'if' construct must use '{}'s.	257
	Line contains a tab character.	257
	'if' is not followed by whitespace.	257
	'(' is followed by whitespace.	257
	')' is preceded with whitespace.	257
	Line contains a tab character.	258
	'else' construct must use '{}'s.	259
	Line contains a tab character.	259
	Line contains a tab character.	260
	Line contains a tab character.	261
	'}' should be on the same line.	261
	Line contains a tab character.	262
	'if' construct must use '{}'s.	263
	Line contains a tab character.	263
	'if' is not followed by whitespace.	263
	'(' is followed by whitespace.	263
	')' is preceded with whitespace.	263
	Line contains a tab character.	264
	'else' construct must use '{}'s.	265
	Line has trailing spaces.	265
	Line contains a tab character.	265
	Line contains a tab character.	266
	'(' is followed by whitespace.	266
	')' is preceded with whitespace.	266
	Line contains a tab character.	267
	'if' construct must use '{}'s.	269
	Line contains a tab character.	269
	'if' is not followed by whitespace.	269
	'(' is followed by whitespace.	269
	')' is preceded with whitespace.	269
	Line is longer than 80 characters.	270
	Line contains a tab character.	270
	'(' is followed by whitespace.	270
	'(' is followed by whitespace.	270
	')' is preceded with whitespace.	270
	')' is preceded with whitespace.	270
	Line has trailing spaces.	271
	Line contains a tab character.	271
	Line contains a tab character.	272
	Line has trailing spaces.	279
	Line has trailing spaces.	284
	Method 'processTemplates' is not designed for extension - needs to be abstract, final or empty.	284
	'(' is followed by whitespace.	284
	Parameter templDir should be final.	284
	Parameter outDir should be final.	284
	Parameter context should be final.	284
	')' is preceded with whitespace.	284
	Line contains a tab character.	285
	Line contains a tab character.	287
	'if' is not followed by whitespace.	287
	'(' is followed by whitespace.	287
	')' is preceded with whitespace.	287
	Line contains a tab character.	288
	'(' is followed by whitespace.	288
	'+' is not preceded with whitespace.	288
	'+' is not followed by whitespace.	288
	')' is preceded with whitespace.	288
	Line is longer than 80 characters.	289
	Line contains a tab character.	289
	'(' is followed by whitespace.	289
	'+' is not preceded with whitespace.	289
	'+' is not followed by whitespace.	289
	')' is preceded with whitespace.	289
	Line contains a tab character.	290
	Line contains a tab character.	292
	'(' is followed by whitespace.	292
	')' is preceded with whitespace.	292
	Line contains a tab character.	293
	'if' construct must use '{}'s.	294
	Line has trailing spaces.	294
	Line contains a tab character.	294
	'if' is not followed by whitespace.	294
	'(' is followed by whitespace.	294
	')' is preceded with whitespace.	294
	Line contains a tab character.	295
	Line contains a tab character.	297
	'(' is followed by whitespace.	297
	'+' is not preceded with whitespace.	297
	'+' is not followed by whitespace.	297
	')' is preceded with whitespace.	297
	Line contains a tab character.	299
	'(' is followed by whitespace.	299
	')' is preceded with whitespace.	299
	Line contains a tab character.	300
	'(' is followed by whitespace.	300
	')' is preceded with whitespace.	300
	Line contains a tab character.	302
	Line contains a tab character.	303
	'(' is followed by whitespace.	303
	')' is preceded with whitespace.	303
	'if' construct must use '{}'s.	304
	Line has trailing spaces.	304
	Line contains a tab character.	304
	'if' is not followed by whitespace.	304
	'(' is followed by whitespace.	304
	'(' is followed by whitespace.	304
	')' is preceded with whitespace.	304
	')' is preceded with whitespace.	304
	Line contains a tab character.	305
	'(' is followed by whitespace.	305
	'+' is not preceded with whitespace.	305
	'+' is not followed by whitespace.	305
	')' is preceded with whitespace.	305
	Line contains a tab character.	306
	'}' should be on the same line.	306
	Line contains a tab character.	307
	'catch' is not followed by whitespace.	307
	'(' is followed by whitespace.	307
	')' is preceded with whitespace.	307
	Line contains a tab character.	308
	'(' is followed by whitespace.	308
	')' is preceded with whitespace.	308
	Line contains a tab character.	309
	'(' is followed by whitespace.	309
	')' is preceded with whitespace.	309
	Line contains a tab character.	310
	Method 'processTemplates' is not designed for extension - needs to be abstract, final or empty.	319
	'(' is followed by whitespace.	319
	Parameter templDir should be final.	319
	')' is preceded with whitespace.	319
	Line contains a tab character.	320
	Line contains a tab character.	322
	'(' is followed by whitespace.	322
	')' is preceded with whitespace.	322
	Missing a Javadoc comment.	325
	'(' is followed by whitespace.	325
	Parameter argv should be final.	325
	')' is preceded with whitespace.	325
	Line contains a tab character.	326
	Line contains a tab character.	328
	'(' is followed by whitespace.	328
	'(' is followed by whitespace.	328
	')' is preceded with whitespace.	328
	Line is longer than 80 characters.	329
	Line contains a tab character.	329
	'(' is followed by whitespace.	329
	')' is preceded with whitespace.	329
	Line contains a tab character.	330
	Line contains a tab character.	331
	Line contains a tab character.	332
	'(' is followed by whitespace.	332
	')' is preceded with whitespace.	332
	')' is preceded with whitespace.	332
	Line contains a tab character.	334
	'(' is followed by whitespace.	334
	'(' is followed by whitespace.	334
	')' is preceded with whitespace.	334
	Line is longer than 80 characters.	335
	Line contains a tab character.	335
	'(' is followed by whitespace.	335
	'+' is not preceded with whitespace.	335
	'+' should be on a new line.	335
	Line has trailing spaces.	336
	Line contains a tab character.	336
	'+' is not preceded with whitespace.	336
	'+' is not followed by whitespace.	336
	')' is preceded with whitespace.	336
	Line contains a tab character.	337
	Line contains a tab character.	338
	Line contains a tab character.	339
	'(' is followed by whitespace.	339
	')' is preceded with whitespace.	339
	')' is preceded with whitespace.	339
	Line contains a tab character.	341
	'(' is followed by whitespace.	341
	'(' is followed by whitespace.	341
	')' is preceded with whitespace.	341
	Line has trailing spaces.	342
	Line is longer than 80 characters.	342
	Line contains a tab character.	342
	'(' is followed by whitespace.	342
	'+' is not preceded with whitespace.	342
	'+' is not followed by whitespace.	342
	'+' is not preceded with whitespace.	342
	'+' is not followed by whitespace.	342
	')' is preceded with whitespace.	342
	Line contains a tab character.	343
	Line contains a tab character.	344
	Line contains a tab character.	345
	'(' is followed by whitespace.	345
	')' is preceded with whitespace.	345
	')' is preceded with whitespace.	345
	Line contains a tab character.	347
	Line is longer than 80 characters.	348
	Line contains a tab character.	348
	Line contains a tab character.	349
	Line contains a tab character.	350
	Line contains a tab character.	351
	Line contains a tab character.	353
	Line contains a tab character.	354
	Line contains a tab character.	355
	Line contains a tab character.	356
	Line contains a tab character.	357
	Line contains a tab character.	360
	'(' is followed by whitespace.	360
	')' is preceded with whitespace.	360
	Line contains a tab character.	361
	'(' is followed by whitespace.	361
	')' is preceded with whitespace.	361
	Line contains a tab character.	363
	Line contains a tab character.	364
	Line contains a tab character.	365
	Line contains a tab character.	367
	Line contains a tab character.	368
	'(' is followed by whitespace.	368
	')' is preceded with whitespace.	368
	Line contains a tab character.	369
	'(' is followed by whitespace.	369
	')' is preceded with whitespace.	369
	Line has trailing spaces.	371
	Line contains a tab character.	371
	Line has trailing spaces.	372
	Line contains a tab character.	372
	Line contains a tab character.	374
	Line has trailing spaces.	375
	Line contains a tab character.	375
	'(' is followed by whitespace.	375
	')' is preceded with whitespace.	375
	Line contains a tab character.	376
	'}' should be on the same line.	376
	Line contains a tab character.	377
	'catch' is not followed by whitespace.	377
	'(' is followed by whitespace.	377
	')' is preceded with whitespace.	377
	Line contains a tab character.	378
	'(' is followed by whitespace.	378
	')' is preceded with whitespace.	378
	Line contains a tab character.	379
	'(' is followed by whitespace.	379
	'+' is not preceded with whitespace.	379
	'+' should be on a new line.	379
	Line has trailing spaces.	380
	Line contains a tab character.	380
	'!=' is not preceded with whitespace.	380
	'!=' is not followed by whitespace.	380
	'?' is not preceded with whitespace.	380
	Avoid inline conditionals.	380
	'?' is not followed by whitespace.	380
	':' is not preceded with whitespace.	380
	':' is not followed by whitespace.	380
	')' is preceded with whitespace.	380
	Line contains a tab character.	381
	')' is preceded with whitespace.	381
	Line contains a tab character.	382
	Line contains a tab character.	383
	'if' is not followed by whitespace.	383
	'(' is followed by whitespace.	383
	'(' is followed by whitespace.	383
	')' is preceded with whitespace.	383
	')' is preceded with whitespace.	383
	Line contains a tab character.	384
	'(' is followed by whitespace.	384
	')' is preceded with whitespace.	384
	Line contains a tab character.	385
	'(' is followed by whitespace.	385
	')' is preceded with whitespace.	385
	Line contains a tab character.	386
	Line contains a tab character.	388
	Line contains a tab character.	389
	'for' is not followed by whitespace.	389
	'(' is followed by whitespace.	389
	')' is preceded with whitespace.	389
	'if' construct must use '{}'s.	390
	Line contains a tab character.	390
	'if' is not followed by whitespace.	390
	'(' is followed by whitespace.	390
	')' is preceded with whitespace.	390
	Line contains a tab character.	391
	'(' is followed by whitespace.	391
	')' is preceded with whitespace.	391
	Line contains a tab character.	392
	Line contains a tab character.	394
	Line contains a tab character.	395
	'if' is not followed by whitespace.	395
	'(' is followed by whitespace.	395
	')' is preceded with whitespace.	395
	Line contains a tab character.	396
	'(' is followed by whitespace.	396
	')' is preceded with whitespace.	396
	Line contains a tab character.	397
	'(' is followed by whitespace.	397
	')' is preceded with whitespace.	397
	Line contains a tab character.	398
	Line has trailing spaces.	399
	Line contains a tab character.	399
	'for' construct must use '{}'s.	400
	Line has trailing spaces.	400
	Line contains a tab character.	400
	'for' is not followed by whitespace.	400
	'(' is followed by whitespace.	400
	')' is preceded with whitespace.	400
	Line contains a tab character.	401
	'(' is followed by whitespace.	401
	'+' is not preceded with whitespace.	401
	'+' is not followed by whitespace.	401
	')' is preceded with whitespace.	401
	Line is longer than 80 characters.	403
	Line contains a tab character.	403
	'(' is followed by whitespace.	403
	'(' is followed by whitespace.	403
	'(' is followed by whitespace.	403
	')' is preceded with whitespace.	403
	')' is preceded with whitespace.	403
	')' is preceded with whitespace.	403
	'if' construct must use '{}'s.	404
	Line contains a tab character.	404
	'if' is not followed by whitespace.	404
	'(' is followed by whitespace.	404
	')' is preceded with whitespace.	404
	Line contains a tab character.	405
	'(' is followed by whitespace.	405
	'+' is not preceded with whitespace.	405
	'+' is not followed by whitespace.	405
	'3' is a magic number.	405
	')' is preceded with whitespace.	405
	Line has trailing spaces.	406
	Line contains a tab character.	406
	'(' is followed by whitespace.	406
	')' is preceded with whitespace.	406
	Line has trailing spaces.	407
	Line contains a tab character.	407
	Line contains a tab character.	408
	Missing a Javadoc comment.	411
	'(' is followed by whitespace.	411
	Parameter msg should be final.	411
	Parameter rc should be final.	411
	')' is preceded with whitespace.	411
	Line contains a tab character.	412
	Line contains a tab character.	413
	'(' is followed by whitespace.	413
	'+' is not preceded with whitespace.	413
	'+' is not followed by whitespace.	413
	'+' is not preceded with whitespace.	413
	'+' is not followed by whitespace.	413
	'+' is not preceded with whitespace.	413
	'+' is not followed by whitespace.	413
	')' is preceded with whitespace.	413
	Line contains a tab character.	414
	'if' construct must use '{}'s.	415
	Line contains a tab character.	415
	'if' is not followed by whitespace.	415
	'(' is followed by whitespace.	415
	')' is preceded with whitespace.	415
	Line contains a tab character.	416
	'(' is followed by whitespace.	416
	')' is preceded with whitespace.	416
	Missing a Javadoc comment.	419
	Line contains a tab character.	420
	Line is longer than 80 characters.	421
	Line contains a tab character.	421
	'(' is followed by whitespace.	421
	Line contains a tab character.	422
	'(' is followed by whitespace.	422
	Line contains a tab character.	423
	'(' is followed by whitespace.	423
	Line contains a tab character.	424
	Missing a Javadoc comment.	427
	'(' is followed by whitespace.	427
	Parameter args should be final.	427
	')' is preceded with whitespace.	427
	Line contains a tab character.	428
	Line contains a tab character.	429
	'(' is followed by whitespace.	429
	')' is preceded with whitespace.	429
	Line contains a tab character.	430
	'(' is followed by whitespace.	430
	'+' is not preceded with whitespace.	430
	'+' is not followed by whitespace.	430
	')' is preceded with whitespace.	430
	Line contains a tab character.	431
	Line contains a tab character.	432
	Line contains a tab character.	433
	'cast' is not followed by whitespace.	433
	'(' is followed by whitespace.	433
	')' is preceded with whitespace.	433
	Line is longer than 80 characters.	434
	Line contains a tab character.	434
	'(' is followed by whitespace.	434
	'(' is followed by whitespace.	434
	'(' is followed by whitespace.	434
	')' is preceded with whitespace.	434
	')' is preceded with whitespace.	434
	')' is preceded with whitespace.	434
	Line contains a tab character.	435
	'(' is followed by whitespace.	435
	')' is preceded with whitespace.	435
	Line contains a tab character.	436
	'}' should be on the same line.	436
	Line contains a tab character.	437
	'catch' is not followed by whitespace.	437
	'(' is followed by whitespace.	437
	')' is preceded with whitespace.	437
	Line contains a tab character.	438
	Line contains a tab character.	439
	'(' is followed by whitespace.	439
	'4' is a magic number.	439
	')' is preceded with whitespace.	439
	Line contains a tab character.	440

org/openphacts/nextprot/TemplateException.java

Violation	Message	Line
	First sentence should end with a period.	3
	Missing a Javadoc comment.	15
	'(' is followed by whitespace.	15
	Parameter msg should be final.	15
	')' is preceded with whitespace.	15
	Line contains a tab character.	16
	'(' is followed by whitespace.	16
	')' is preceded with whitespace.	16
	Line has trailing spaces.	18

org/openphacts/nextprot/util/EchoTool.java

Violation	Message	Line
	Missing package-info.java file.	0
	Line is longer than 80 characters.	4
	Missing a Javadoc comment.	16
	Missing a Javadoc comment.	17
	Missing a Javadoc comment.	18
	Missing a Javadoc comment.	19
	First sentence should end with a period.	21
	Line contains a tab character.	25
	Line contains a tab character.	26
	'(' is followed by whitespace.	26
	')' is preceded with whitespace.	26
	Line contains a tab character.	27
	'80' is a magic number.	27
	Line contains a tab character.	28
	Line has trailing spaces.	30
	Method 'println' is not designed for extension - needs to be abstract, final or empty.	36
	'(' is followed by whitespace.	36
	Parameter x should be final.	36
	')' is preceded with whitespace.	36
	'if' construct must use '{}'s.	37
	Line contains a tab character.	37
	'if' is not followed by whitespace.	37
	'(' is followed by whitespace.	37
	')' is preceded with whitespace.	37
	Line contains a tab character.	38
	'(' is followed by whitespace.	38
	')' is preceded with whitespace.	38
	Missing a Javadoc comment.	41
	'(' is followed by whitespace.	41
	Parameter x should be final.	41
	')' is preceded with whitespace.	41
	Line contains a tab character.	42
	Line contains a tab character.	43
	'if' is not followed by whitespace.	43
	'(' is followed by whitespace.	43
	')' is preceded with whitespace.	43
	Line contains a tab character.	44
	Line contains a tab character.	45
	'(' is followed by whitespace.	45
	')' is preceded with whitespace.	45
	Line contains a tab character.	46
	'}' should be on the same line.	46
	Line contains a tab character.	47
	'catch' is not followed by whitespace.	47
	'(' is followed by whitespace.	47
	')' is preceded with whitespace.	47
	Line contains a tab character.	48
	Line contains a tab character.	49
	Line contains a tab character.	50
	Line contains a tab character.	51
	Missing a Javadoc comment.	54
	'if' construct must use '{}'s.	55
	Line contains a tab character.	55
	'if' is not followed by whitespace.	55
	'(' is followed by whitespace.	55
	'cast' is not followed by whitespace.	55
	')' is preceded with whitespace.	55
	Line contains a tab character.	56
	'if' construct must use '{}'s.	57
	Line has trailing spaces.	57
	Line contains a tab character.	57
	'if' is not followed by whitespace.	57
	'(' is followed by whitespace.	57
	')' is preceded with whitespace.	57
	Line contains a tab character.	58
	'(' is followed by whitespace.	58
	')' is preceded with whitespace.	58
	First sentence should end with a period.	61
	Method 'startProgress' is not designed for extension - needs to be abstract, final or empty.	64
	Line contains a tab character.	65
	Method 'advance' is not designed for extension - needs to be abstract, final or empty.	73
	'(' is followed by whitespace.	73
	Parameter amount should be final.	73
	')' is preceded with whitespace.	73
	Line contains a tab character.	74
	'(' is followed by whitespace.	74
	')' is preceded with whitespace.	74
	Line contains a tab character.	75
	'if' is not followed by whitespace.	75
	'(' is followed by whitespace.	75
	')' is preceded with whitespace.	75
	Line contains a tab character.	76
	'+=' is not preceded with whitespace.	76
	'+=' is not followed by whitespace.	76
	Line contains a tab character.	77
	Line contains a tab character.	78
	Method 'advance' is not designed for extension - needs to be abstract, final or empty.	84
	Line contains a tab character.	85
	Line contains a tab character.	86
	Method 'getMark' is not designed for extension - needs to be abstract, final or empty.	93
	Line contains a tab character.	94
	Method 'setMark' is not designed for extension - needs to be abstract, final or empty.	101
	Parameter newHashMark should be final.	101
	Line contains a tab character.	102
	Line has trailing spaces.	104
	Method 'getColumns' is not designed for extension - needs to be abstract, final or empty.	109
	Line contains a tab character.	110
	Method 'setColumns' is not designed for extension - needs to be abstract, final or empty.	117
	Parameter newMaxCols should be final.	117
	Line contains a tab character.	118
	'(' is followed by whitespace.	118
	')' is preceded with whitespace.	118
	'if' construct must use '{}'s.	119
	Line has trailing spaces.	119
	Line contains a tab character.	119
	'if' is not followed by whitespace.	119
	'(' is followed by whitespace.	119
	')' is preceded with whitespace.	119
	Line contains a tab character.	120
	Line has trailing spaces.	122

org/openphacts/nextprot/util/HashTool.java

Violation	Message	Line
	Missing a Javadoc comment.	16
	Line contains a tab character.	22
	Method 'adler' is not designed for extension - needs to be abstract, final or empty.	31
	'(' is followed by whitespace.	31
	Parameter obj should be final.	31
	')' is preceded with whitespace.	31
	Line contains a tab character.	32
	Line contains a tab character.	33
	'(' is followed by whitespace.	33
	')' is preceded with whitespace.	33
	Line contains a tab character.	34
	Line has trailing spaces.	36

NeXtprot2rdf

NeXtoR

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Project Information

Checkstyle Results

Summary

Files

Rules

Details

org/openphacts/nextprot/App.java

org/openphacts/nextprot/TemplateAssembler.java

org/openphacts/nextprot/TemplateException.java

org/openphacts/nextprot/util/EchoTool.java

org/openphacts/nextprot/util/HashTool.java